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senp6a SUMO specific peptidase 6a [ Esox lucius (northern pike) ]

Gene ID: 105017842, updated on 18-Jun-2024

Summary

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Gene symbol
senp6a
Gene description
SUMO specific peptidase 6a
See related
Ensembl:ENSELUG00000015978
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Also known as
senp6
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 18
Exon count:
23
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 18 NC_047586.1 (7197287..7216001)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG18 NC_025985.4 (7346825..7362401)

Chromosome 18 - NC_047586.1Genomic Context describing neighboring genes Neighboring gene cell cycle control protein 50A Neighboring gene filamin-A-interacting protein 1 Neighboring gene myosin VIa Neighboring gene interphotoreceptor matrix proteoglycan 1 Neighboring gene uncharacterized LOC105017844

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SUMO-specific endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein desumoylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of kinetochore assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of spindle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sentrin-specific protease 6
Names
SUMO specific peptidase 6
SUMO1/sentrin specific peptidase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047586.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    7197287..7216001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034287815.1 → XP_034143706.1  sentrin-specific protease 6 isoform X1

    Related
    ENSELUP00000016082.3, ENSELUT00000025331.3
    Conserved Domains (2) summary
    PHA03307
    Location:803 → 964
    PHA03307; transcriptional regulator ICP4; Provisional
    COG5160
    Location:690 → 802
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

  2. XM_034287816.1 → XP_034143707.1  sentrin-specific protease 6 isoform X2

    Related
    ENSELUP00000036608.3, ENSELUT00000025379.3
    Conserved Domains (2) summary
    PHA03307
    Location:802 → 963
    PHA03307; transcriptional regulator ICP4; Provisional
    COG5160
    Location:689 → 801
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

  3. XM_034287817.1 → XP_034143708.1  sentrin-specific protease 6 isoform X3

    Conserved Domains (2) summary
    PHA03307
    Location:802 → 963
    PHA03307; transcriptional regulator ICP4; Provisional
    COG5160
    Location:689 → 801
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

  4. XM_034287818.1 → XP_034143709.1  sentrin-specific protease 6 isoform X4

    Related
    ENSELUP00000091048.1, ENSELUT00000098224.1
    Conserved Domains (2) summary
    PHA03307
    Location:796 → 957
    PHA03307; transcriptional regulator ICP4; Provisional
    COG5160
    Location:683 → 795
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

  5. XM_034287819.1 → XP_034143710.1  sentrin-specific protease 6 isoform X5

    Conserved Domains (2) summary
    PHA03307
    Location:756 → 917
    PHA03307; transcriptional regulator ICP4; Provisional
    COG5160
    Location:643 → 755
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

  6. XM_034287820.1 → XP_034143711.1  sentrin-specific protease 6 isoform X5

    Conserved Domains (2) summary
    PHA03307
    Location:756 → 917
    PHA03307; transcriptional regulator ICP4; Provisional
    COG5160
    Location:643 → 755
    ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
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