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crispld2 cysteine-rich secretory protein LCCL domain containing 2 [ Esox lucius (northern pike) ]

Gene ID: 105016683, updated on 18-Jun-2024

Summary

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Gene symbol
crispld2
Gene description
cysteine-rich secretory protein LCCL domain containing 2
See related
Ensembl:ENSELUG00000014157
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 2 NC_047570.1 (16809547..16824217, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG02 NC_025969.4 (23227463..23242113)

Chromosome 2 - NC_047570.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109616572 Neighboring gene hepatic nuclear factor 4, beta Neighboring gene ubiquitin specific peptidase 10 Neighboring gene MARVEL domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine-rich secretory protein LCCL domain-containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047570.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    16809547..16824217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010880698.3 → XP_010879000.1  cysteine-rich secretory protein LCCL domain-containing 2

    UniProtKB/TrEMBL
    A0A3P8YBQ0, A0A3P8YBY5
    Related
    ENSELUP00000014073.3, ENSELUT00000022765.3
    Conserved Domains (3) summary
    smart00603
    Location:309 → 392
    LCCL; LCCL domain
    cd05380
    Location:68 → 213
    SCP_euk; SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed ...
    pfam03815
    Location:412 → 511
    LCCL; LCCL domain
Nucleotide Protein
Heading Accession and Version

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