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rfx2 regulatory factor X, 2 (influences HLA class II expression) [ Esox lucius (northern pike) ]

Gene ID: 105011634, updated on 18-Jun-2024

Summary

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Gene symbol
rfx2
Gene description
regulatory factor X, 2 (influences HLA class II expression)
See related
Ensembl:ENSELUG00000014877
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 8
Exon count:
20
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 8 NC_047576.1 (14518541..14558683, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG08 NC_025975.4 (14553784..14593909, complement)

Chromosome 8 - NC_047576.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105011632 Neighboring gene leupaxin Neighboring gene FCH and mu domain containing endocytic adaptor 1 Neighboring gene acyl-CoA synthetase bubblegum family member 2 Neighboring gene MLLT1 super elongation complex subunit a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein RFX2
Names
regulatory factor X2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047576.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    14518541..14558683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010871825.5 → XP_010870127.1  DNA-binding protein RFX2 isoform X4

    UniProtKB/TrEMBL
    A0A3P9A3Y3
    Related
    ENSELUP00000035712.1, ENSELUT00000039056.3
    Conserved Domains (2) summary
    pfam02257
    Location:215 → 287
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:48 → 192
    RFX1_trans_act; RFX1 transcription activation region

  2. XM_010871821.5 → XP_010870123.1  DNA-binding protein RFX2 isoform X1

    UniProtKB/TrEMBL
    A0A6Q2XCU0
    Related
    ENSELUP00000014787.3, ENSELUT00000023697.3
    Conserved Domains (2) summary
    pfam02257
    Location:240 → 312
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:48 → 192
    RFX1_trans_act; RFX1 transcription activation region

  3. XM_010871824.5 → XP_010870126.1  DNA-binding protein RFX2 isoform X3

    UniProtKB/TrEMBL
    A0A6Q2XCU0
    Related
    ENSELUP00000051794.2, ENSELUT00000053191.2
    Conserved Domains (2) summary
    pfam02257
    Location:207 → 279
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:15 → 159
    RFX1_trans_act; RFX1 transcription activation region

  4. XM_010871823.5 → XP_010870125.1  DNA-binding protein RFX2 isoform X2

    UniProtKB/TrEMBL
    A0A6Q2WSP5
    Related
    ENSELUP00000044689.1, ENSELUT00000058821.2
    Conserved Domains (2) summary
    pfam02257
    Location:218 → 290
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:26 → 170
    RFX1_trans_act; RFX1 transcription activation region
Nucleotide Protein
Heading Accession and Version

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