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rabggta Rab geranylgeranyltransferase subunit alpha [ Esox lucius (northern pike) ]

Gene ID: 105006958, updated on 18-Jun-2024

Summary

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Gene symbol
rabggta
Gene description
Rab geranylgeranyltransferase subunit alpha
See related
Ensembl:ENSELUG00000011184
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 8
Exon count:
18
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 8 NC_047576.1 (16243689..16251434)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG08 NC_025975.4 (16294425..16302038)

Chromosome 8 - NC_047576.1Genomic Context describing neighboring genes Neighboring gene interleukin 12 receptor, beta 2a Neighboring gene Fc receptor-like protein 6 Neighboring gene transglutaminase 1 like 1 Neighboring gene (Lyso)-N-acylphosphatidylethanolamine lipase-like Neighboring gene uncharacterized LOC109616054 Neighboring gene defender against cell death 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Rab geranylgeranyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein geranylgeranylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Rab-protein geranylgeranyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
geranylgeranyl transferase type-2 subunit alpha
Names
Rab geranylgeranyltransferase alpha subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047576.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    16243689..16251434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010865698.5 → XP_010864000.4  geranylgeranyl transferase type-2 subunit alpha

    UniProtKB/TrEMBL
    A0A3P8ZXI8
    Conserved Domains (4) summary
    sd00033
    Location:477 → 502
    LRR_RI; leucine-rich repeat [structural motif]
    pfam07711
    Location:261 → 361
    RabGGT_insert; Rab geranylgeranyl transferase alpha-subunit, insert domain
    cd21340
    Location:467 → 565
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl40684
    Location:59 → 254
    PPTA; Protein prenyltransferase alpha subunit repeat

  2. XM_010865697.5 → XP_010863999.4  geranylgeranyl transferase type-2 subunit alpha

    UniProtKB/TrEMBL
    A0A3P8ZXI8
    Related
    ENSELUP00000033038.3, ENSELUT00000001674.3
    Conserved Domains (4) summary
    sd00033
    Location:477 → 502
    LRR_RI; leucine-rich repeat [structural motif]
    pfam07711
    Location:261 → 361
    RabGGT_insert; Rab geranylgeranyl transferase alpha-subunit, insert domain
    cd21340
    Location:467 → 565
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl40684
    Location:59 → 254
    PPTA; Protein prenyltransferase alpha subunit repeat

RNA

  1. XR_002197042.3 RNA Sequence

    Related
    ENSELUT00000054324.2
Nucleotide Protein
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