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TNRC6C trinucleotide repeat containing adaptor 6C [ Bison bison bison ]

Gene ID: 105000563, updated on 13-Mar-2024

Summary

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Gene symbol
TNRC6C
Gene description
trinucleotide repeat containing adaptor 6C
See related
Ensembl:ENSBBBG00000019121
Gene type
protein coding
RefSeq status
MODEL
Organism
Bison bison bison (sub-species: bison)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bison
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Bison_UMD1.0 (GCF_000754665.1) Unplaced Scaffold NW_011494943.1 (9294377..9336376)

NW_011494943.1Genomic Context describing neighboring genes Neighboring gene SEC14 like lipid binding 1 Neighboring gene septin 9 Neighboring gene transmembrane channel like 6 Neighboring gene synaptogyrin 2 Neighboring gene transmembrane channel like 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011494943.1 Unplaced Scaffold Reference Bison_UMD1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trinucleotide repeat-containing gene 6C protein
Names
trinucleotide repeat containing 6C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bison bison bison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bison_UMD1.0 Primary Assembly

Genomic

  1. NW_011494943.1 Reference Bison_UMD1.0 Primary Assembly

    Range
    9294377..9336376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010856514.1 → XP_010854816.1  trinucleotide repeat-containing gene 6C protein

    UniProtKB/TrEMBL
    A0A6P3IKG3
    Related
    ENSBBBP00000024181.1, ENSBBBT00000019970.1
    Conserved Domains (5) summary
    cd12713
    Location:1522 → 1604
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:914 → 951
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam10427
    Location:795 → 911
    Ago_hook; Argonaute hook
    pfam12938
    Location:993 → 1217
    M_domain; M domain of GW182
    pfam16608
    Location:1228 → 1521
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
Nucleotide Protein
Heading Accession and Version

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