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IFT172 intraflagellar transport 172 [ Bison bison bison ]

Gene ID: 104989087, updated on 12-Mar-2024

Summary

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Gene symbol
IFT172
Gene description
intraflagellar transport 172
See related
Ensembl:ENSBBBG00000015451
Gene type
protein coding
RefSeq status
MODEL
Organism
Bison bison bison (sub-species: bison)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bison
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
48
Annotation release Status Assembly Chr Location
100 current Bison_UMD1.0 (GCF_000754665.1) Unplaced Scaffold NW_011494717.1 (9263913..9301976, complement)

NW_011494717.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor binding protein 1 Neighboring gene keratinocyte associated protein 3 Neighboring gene fibronectin type III domain containing 4 Neighboring gene glucokinase regulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011494717.1 Unplaced Scaffold Reference Bison_UMD1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intraciliary transport particle B IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 172 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bison bison bison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bison_UMD1.0 Primary Assembly

Genomic

  1. NW_011494717.1 Reference Bison_UMD1.0 Primary Assembly

    Range
    9263913..9301976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010840652.1 → XP_010838954.1  intraflagellar transport protein 172 homolog isoform X2

    UniProtKB/TrEMBL
    A0A6P3HIK4
    Conserved Domains (5) summary
    COG2319
    Location:17 → 377
    WD40; WD40 repeat [General function prediction only]
    cd15832
    Location:759 → 815
    SNAP; TPR repeat [structural motif]
    sd00039
    Location:20 → 59
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:6 → 267
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl24038
    Location:759 → 943
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  2. XM_010840651.1 → XP_010838953.1  intraflagellar transport protein 172 homolog isoform X1

    UniProtKB/TrEMBL
    A0A6P3H691
    Related
    ENSBBBP00000021791.1, ENSBBBT00000002624.1
    Conserved Domains (5) summary
    COG2319
    Location:17 → 388
    WD40; WD40 repeat [General function prediction only]
    cd15832
    Location:810 → 866
    SNAP; TPR repeat [structural motif]
    sd00039
    Location:20 → 64
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:17 → 318
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl24038
    Location:810 → 994
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  3. XM_010840653.1 → XP_010838955.1  intraflagellar transport protein 172 homolog isoform X3

    UniProtKB/TrEMBL
    A0A6P3HK90
    Conserved Domains (5) summary
    COG2319
    Location:17 → 388
    WD40; WD40 repeat [General function prediction only]
    cd15832
    Location:810 → 866
    SNAP; TPR repeat [structural motif]
    sd00039
    Location:20 → 64
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:17 → 318
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl24038
    Location:810 → 994
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
Nucleotide Protein
Heading Accession and Version

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