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psip1a PC4 and SFRS1 interacting protein 1a [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104964383, updated on 12-Mar-2024

Summary

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Gene symbol
psip1a
Gene description
PC4 and SFRS1 interacting protein 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Also known as
psip1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011369945.1 (17646..29198, complement)

NW_011369945.1Genomic Context describing neighboring genes Neighboring gene small nuclear RNA activating complex, polypeptide 3 Neighboring gene basonuclin zinc finger protein 2 Neighboring gene tetraspanin 4a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011369945.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PC4 and SFRS1-interacting protein
Names
PC4 and SFRS1 interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011369945.1 Reference NC01 Primary Assembly

    Range
    17646..29198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010793136.1 → XP_010791438.1  PC4 and SFRS1-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A6I9PVK7
    Conserved Domains (2) summary
    cd05834
    Location:3 → 87
    HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
    pfam11467
    Location:350 → 449
    LEDGF; Lens epithelium-derived growth factor (LEDGF)

  2. XM_010793138.1 → XP_010791440.1  PC4 and SFRS1-interacting protein isoform X3

    UniProtKB/TrEMBL
    A0A6I9PUI2
    Conserved Domains (2) summary
    cd05834
    Location:3 → 87
    HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
    pfam11467
    Location:307 → 406
    LEDGF; Lens epithelium-derived growth factor (LEDGF)

  3. XM_010793137.1 → XP_010791439.1  PC4 and SFRS1-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A6I9PK39
    Conserved Domains (2) summary
    cd05834
    Location:3 → 87
    HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
    pfam11467
    Location:345 → 444
    LEDGF; Lens epithelium-derived growth factor (LEDGF)
Nucleotide Protein
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