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sall1a spalt-like transcription factor 1a [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104964147, updated on 12-Mar-2024

Summary

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Gene symbol
sall1a
Gene description
spalt-like transcription factor 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Also known as
sall1
Orthologs
human zebrafish all
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Genomic context

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See sall1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011369470.1 (14927..26976)

NW_011369470.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011369470.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sal-like protein 1
Names
spalt like transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011369470.1 Reference NC01 Primary Assembly

    Range
    14927..26976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010792867.1 → XP_010791169.1  sal-like protein 1

    UniProtKB/TrEMBL
    A0A6I9PJG3
    Conserved Domains (5) summary
    smart00355
    Location:440 → 462
    ZnF_C2H2; zinc finger
    sd00017
    Location:691 → 711
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:987 → 1007
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:1112 → 1134
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:703 → 728
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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