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trappc4 trafficking protein particle complex subunit 4 [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104951691, updated on 12-Mar-2024

Summary

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Gene symbol
trappc4
Gene description
trafficking protein particle complex subunit 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011351702.1 (1200791..1206205, complement)

NW_011351702.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104951685 Neighboring gene zinc finger protein 613-like Neighboring gene FH2 domain-containing protein 1-like Neighboring gene ribosomal protein S25

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011351702.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAPP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trafficking protein particle complex subunit 4
Names
trafficking protein particle complex 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011351702.1 Reference NC01 Primary Assembly

    Range
    1200791..1206205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010778414.1 → XP_010776716.1  trafficking protein particle complex subunit 4

    See identical proteins and their annotated locations for XP_010776716.1

    UniProtKB/TrEMBL
    A0A6I9NQG8
    Conserved Domains (2) summary
    cd14856
    Location:4 → 203
    TRAPPC4_synbindin; Trafficking protein particle complex subunit 4
    cl00117
    Location:39 → 98
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...

  2. XM_010778415.1 → XP_010776717.1  trafficking protein particle complex subunit 4

    See identical proteins and their annotated locations for XP_010776717.1

    UniProtKB/TrEMBL
    A0A6I9NQG8
    Conserved Domains (2) summary
    cd14856
    Location:4 → 203
    TRAPPC4_synbindin; Trafficking protein particle complex subunit 4
    cl00117
    Location:39 → 98
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
Nucleotide Protein
Heading Accession and Version

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