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pax5 paired box 5 [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104951417, updated on 22-Oct-2023

Summary

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Gene symbol
pax5
Gene description
paired box 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011351697.1 (1285158..1311005, complement)

NW_011351697.1Genomic Context describing neighboring genes Neighboring gene phosphoglucomutase 2 Neighboring gene zinc finger, CCHC domain containing 7 Neighboring gene zinc finger CCHC domain-containing protein 7-like Neighboring gene paired box protein Pax-5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011351697.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired box protein Pax-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011351697.1 Reference NC01 Primary Assembly

    Range
    1285158..1311005 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010778061.1 → XP_010776363.1  paired box protein Pax-5

    UniProtKB/TrEMBL
    A0A6I9NMW7
    Conserved Domains (1) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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