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atxn1a ataxin 1a [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104950859, updated on 12-Mar-2024

Summary

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Gene symbol
atxn1a
Gene description
ataxin 1a
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Also known as
atxn1
Orthologs
human zebrafish all
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Genomic context

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See atxn1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011350947.1 (53671..147020, complement)

NW_011350947.1Genomic Context describing neighboring genes Neighboring gene myosin regulatory light chain interacting protein Neighboring gene guanosine monophosphate reductase Neighboring gene family with sequence similarity 8 member A1a Neighboring gene fatty acid binding protein 4a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011350947.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-1
Names
ataxin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011350947.1 Reference NC01 Primary Assembly

    Range
    53671..147020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010777435.1 → XP_010775737.1  ataxin-1

    See identical proteins and their annotated locations for XP_010775737.1

    UniProtKB/TrEMBL
    A0A6I9NGS5
    Conserved Domains (2) summary
    pfam08517
    Location:557 → 664
    AXH; Ataxin-1 and HBP1 module (AXH)
    pfam12547
    Location:352 → 407
    ATXN-1_C; Capicua transcriptional repressor modulator

  2. XM_010777436.1 → XP_010775738.1  ataxin-1

    See identical proteins and their annotated locations for XP_010775738.1

    UniProtKB/TrEMBL
    A0A6I9NGS5
    Conserved Domains (2) summary
    pfam08517
    Location:557 → 664
    AXH; Ataxin-1 and HBP1 module (AXH)
    pfam12547
    Location:352 → 407
    ATXN-1_C; Capicua transcriptional repressor modulator
Nucleotide Protein
Heading Accession and Version

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