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rtel1 regulator of telomere elongation helicase 1 [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104939110, updated on 12-Mar-2024

Summary

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Gene symbol
rtel1
Gene description
regulator of telomere elongation helicase 1
Locus tag
EH28_04810
See related
Ensembl:ENSLCRG00005016753
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) Unplaced Scaffold NW_020861315.1 (2316726..2334057)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017608149.1 (24443..41748, complement)

NW_020861315.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family, member 25 Neighboring gene NADH:ubiquinone oxidoreductase subunit B11 Neighboring gene isoprenylcysteine carboxyl methyltransferase Neighboring gene adenosine deaminase domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA polymerase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of t-circle formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomeric loop disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulator of telomere elongation helicase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NW_020861315.1 Reference L_crocea_2.0 Primary Assembly

    Range
    2316726..2334057
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010755591.3 → XP_010753893.2  regulator of telomere elongation helicase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6G0IQU6
    Related
    ENSLCRP00005043712.1, ENSLCRT00005044476.1
    Conserved Domains (2) summary
    cd13932
    Location:890 → 984
    HN_RTEL1; harmonin_N_like domain of regulator of telomere elongation helicase 1 (also known as RTEL)
    TIGR00604
    Location:10 → 737
    rad3; DNA repair helicase (rad3)

  2. XM_027277274.1 → XP_027133075.1  regulator of telomere elongation helicase 1 isoform X2

    UniProtKB/TrEMBL
    A0A6G0IQU6
    Related
    ENSLCRP00005043733.1, ENSLCRT00005044497.1

  3. XM_019257976.2 → XP_019113521.1  regulator of telomere elongation helicase 1 isoform X3

    UniProtKB/TrEMBL
    A0A6G0IQU6
    Related
    ENSLCRP00005043717.1, ENSLCRT00005044481.1
Nucleotide Protein
Heading Accession and Version

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