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xrcc2 X-ray repair complementing defective repair in Chinese hamster cells 2 [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104938104, updated on 12-Mar-2024

Summary

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Gene symbol
xrcc2
Gene description
X-ray repair complementing defective repair in Chinese hamster cells 2
Locus tag
EH28_04404
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: VIII
Exon count:
6
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) VIII NC_040018.1 (27513537..27516816, complement)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017609124.1 (168908..172694)

Chromosome VIII - NC_040018.1Genomic Context describing neighboring genes Neighboring gene lysine (K)-specific methyltransferase 2Ca Neighboring gene uncharacterized LOC113746366 Neighboring gene histone-lysine N-methyltransferase 2D-like Neighboring gene heparanase-like Neighboring gene myosin light chain 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA strand invasion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Rad51B-Rad51C-Rad51D-XRCC2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in replication fork IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair protein XRCC2
Names
Repetitive proline-rich cell wall protein 2
X-ray repair cross complementing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040018.1 Reference L_crocea_2.0 Primary Assembly

    Range
    27513537..27516816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010754445.3 → XP_010752747.1  DNA repair protein XRCC2

    Conserved Domains (2) summary
    COG0468
    Location:30 → 198
    RecA; RecA/RadA recombinase [Replication, recombination and repair]
    cl21455
    Location:35 → 198
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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