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csf1ra colony stimulating factor 1 receptor, a [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104927057, updated on 11-Apr-2024

Summary

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Gene symbol
csf1ra
Gene description
colony stimulating factor 1 receptor, a
Locus tag
EH28_16747
See related
Ensembl:ENSLCRG00005003432
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Also known as
csf1r
Orthologs
zebrafish all
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Genomic context

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See csf1ra in Genome Data Viewer
Location:
chromosome: I
Exon count:
22
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) I NC_040011.1 (35990791..36001599)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017609806.1 (196377..207199, complement)

Chromosome I - NC_040011.1Genomic Context describing neighboring genes Neighboring gene T-cell surface antigen CD2-like Neighboring gene caudal type homeobox 1a Neighboring gene platelet-derived growth factor receptor, beta polypeptide Neighboring gene HMG box domain containing 3 Neighboring gene SLC35A4 upstream open reading frame protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables macrophage colony-stimulating factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in osteoclast differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CSF1-CSF1R complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
macrophage colony-stimulating factor 1 receptor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040011.1 Reference L_crocea_2.0 Primary Assembly

    Range
    35990791..36001599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010741048.3 → XP_010739350.1  macrophage colony-stimulating factor 1 receptor 1 isoform X1

    Conserved Domains (5) summary
    smart00410
    Location:228 → 309
    IG_like; Immunoglobulin like
    pfam07714
    Location:594 → 920
    Pkinase_Tyr; Protein tyrosine kinase
    pfam13927
    Location:214 → 296
    Ig_3; Immunoglobulin domain
    cl11960
    Location:314 → 413
    Ig; Immunoglobulin domain
    cl21453
    Location:551 → 925
    PKc_like; Protein Kinases, catalytic domain

  2. XM_010741049.3 → XP_010739351.1  macrophage colony-stimulating factor 1 receptor 1 isoform X2

    See identical proteins and their annotated locations for XP_010739351.1

    UniProtKB/TrEMBL
    A0A6G0I3E7
    Related
    ENSLCRP00005016295.1, ENSLCRT00005016648.1
    Conserved Domains (4) summary
    smart00409
    Location:35 → 112
    IG; Immunoglobulin
    smart00410
    Location:228 → 309
    IG_like; Immunoglobulin like
    cl11960
    Location:314 → 412
    Ig; Immunoglobulin domain
    cl21453
    Location:551 → 924
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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