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Chrd chordin [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104862503, updated on 12-Mar-2024

Summary

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Gene symbol
Chrd
Gene description
chordin
Locus tag
H920_05392
See related
Ensembl:ENSFDAG00000012332
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900924.1 (53112515..53121512, complement)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011044716.1 (11907036..11915998, complement)

NW_022900924.1Genomic Context describing neighboring genes Neighboring gene ras-related protein Rab-5A-like Neighboring gene transmembrane epididymal protein 1A-like Neighboring gene thrombopoietin Neighboring gene RNA polymerase II, I and III subunit H Neighboring gene chloride voltage-gated channel 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chordin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900924.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    53112515..53121512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010624562.3 → XP_010622864.1  chordin

    UniProtKB/TrEMBL
    A0A091DM80
    Related
    ENSFDAP00000002666.1
    Conserved Domains (3) summary
    smart00214
    Location:776 → 842
    VWC; von Willebrand factor (vWF) type C domain
    smart00754
    Location:523 → 637
    CHRD; A domain in the BMP inhibitor chordin and in microbial proteins
    cl17735
    Location:697 → 754
    VWC; von Willebrand factor type C domain
Nucleotide Protein
Heading Accession and Version

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