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Hdac4 histone deacetylase 4 [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104856343, updated on 12-Mar-2024

Summary

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Gene symbol
Hdac4
Gene description
histone deacetylase 4
Locus tag
H920_20079
See related
Ensembl:ENSFDAG00000020364
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900928.1 (134332653..134583418, complement)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011047988.1 (325692..573546, complement)

NW_022900928.1Genomic Context describing neighboring genes Neighboring gene TRAF3 interacting protein 1 Neighboring gene twist family bHLH transcription factor 2 Neighboring gene uncharacterized LOC104856342 Neighboring gene uncharacterized LOC104856344 Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900928.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    134332653..134583418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033764730.1 → XP_033620621.1  histone deacetylase 4 isoform X3

    UniProtKB/TrEMBL
    A0A091D6P9
    Conserved Domains (2) summary
    cd10162
    Location:91 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:649 → 1057
    HDAC4; Histone deacetylase 4

  2. XM_010615696.3 → XP_010613998.1  histone deacetylase 4 isoform X3

    See identical proteins and their annotated locations for XP_010613998.1

    UniProtKB/TrEMBL
    A0A091D6P9
    Conserved Domains (2) summary
    cd10162
    Location:91 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:649 → 1057
    HDAC4; Histone deacetylase 4

  3. XM_010615705.2 → XP_010614007.1  histone deacetylase 4 isoform X6

    See identical proteins and their annotated locations for XP_010614007.1

    UniProtKB/TrEMBL
    A0A091D6P9
    Conserved Domains (2) summary
    cd10162
    Location:64 → 125
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:622 → 1030
    HDAC4; Histone deacetylase 4

  4. XM_033764731.1 → XP_033620622.1  histone deacetylase 4 isoform X4

    UniProtKB/TrEMBL
    A0A091D6P9
    Conserved Domains (2) summary
    cd10162
    Location:95 → 156
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:653 → 1056
    HDAC4; Histone deacetylase 4

  5. XM_033764728.1 → XP_033620619.1  histone deacetylase 4 isoform X1

    UniProtKB/TrEMBL
    A0A091D6P9
    Conserved Domains (2) summary
    cd10162
    Location:95 → 156
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:653 → 1061
    HDAC4; Histone deacetylase 4

  6. XM_033764729.1 → XP_033620620.1  histone deacetylase 4 isoform X2

    UniProtKB/TrEMBL
    A0A091D6P9
    Conserved Domains (2) summary
    cd10162
    Location:95 → 156
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:653 → 1061
    HDAC4; Histone deacetylase 4

  7. XM_010615701.2 → XP_010614003.1  histone deacetylase 4 isoform X5

    UniProtKB/TrEMBL
    A0A091D6P9
    Conserved Domains (2) summary
    cd10162
    Location:86 → 147
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:644 → 1052
    HDAC4; Histone deacetylase 4

  8. XM_033764732.1 → XP_033620623.1  histone deacetylase 4 isoform X6

    UniProtKB/TrEMBL
    A0A091D6P9
    Conserved Domains (2) summary
    cd10162
    Location:64 → 125
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:622 → 1030
    HDAC4; Histone deacetylase 4
Nucleotide Protein
Heading Accession and Version

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