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COMP cartilage oligomeric matrix protein [ Haliaeetus leucocephalus (bald eagle) ]

Gene ID: 104829140, updated on 3-Aug-2024

Summary

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Gene symbol
COMP
Gene description
cartilage oligomeric matrix protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Haliaeetus leucocephalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Accipitrimorphae; Accipitriformes; Accipitridae; Accipitrinae; Haliaeetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Haliaeetus_leucocephalus-4.0 (GCF_000737465.1) Unplaced Scaffold NW_010972600.1 (1832409..1851248)

NW_010972600.1Genomic Context describing neighboring genes Neighboring gene growth differentiation factor 1 Neighboring gene UPF1 RNA helicase and ATPase Neighboring gene CREB regulated transcription coactivator 1 Neighboring gene kelch like family member 26

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010972600.1 Unplaced Scaffold Reference Haliaeetus_leucocephalus-4.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cartilage oligomeric matrix protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haliaeetus leucocephalus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Haliaeetus_leucocephalus-4.0

Genomic

  1. NW_010972600.1 Reference Haliaeetus_leucocephalus-4.0

    Range
    1832409..1851248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010563248.1 → XP_010561550.1  cartilage oligomeric matrix protein

    Conserved Domains (7) summary
    cd00054
    Location:181 → 218
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    sd00001
    Location:398 → 420
    TSP3; TSP3 repeat_short [structural motif]
    sd00002
    Location:339 → 397
    TSP3; TSP3 repeat_long [structural motif]
    sd00003
    Location:270 → 302
    TSP3_1C; TSP3 repeat_1C [structural motif]
    pfam02412
    Location:422 → 458
    TSP_3; Thrombospondin type 3 repeat
    pfam05735
    Location:552 → 749
    TSP_C; Thrombospondin C-terminal region
    cd16077
    Location:29 → 71
    TSP-5cc; Coiled coil region of thrombospondin-5 (TSP-5)
Nucleotide Protein
Heading Accession and Version

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