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PLXNC1 plexin C1 [ Corvus cornix cornix ]

Gene ID: 104696564, updated on 3-Aug-2024

Summary

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Gene symbol
PLXNC1
Gene description
plexin C1
See related
EnsemblRapid:ENSCCCG00025007779
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1A
Exon count:
31
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 1A NC_047057.1 (44226012..44296951)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959976.1 (22702026..22773953, complement)

Chromosome 1A - NC_047057.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-1(IX) chain-like Neighboring gene suppressor of cytokine signaling 2 Neighboring gene CASP2 and RIPK1 domain containing adaptor with death domain Neighboring gene uncharacterized LOC120411841 Neighboring gene centrosomal protein 83 Neighboring gene transmembrane and coiled-coil domain family 3 Neighboring gene uncharacterized LOC120411966

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of semaphorin receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plexin-C1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_047057.1 Reference ASM73873v5 Primary Assembly

    Range
    44226012..44296951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010410946.3 → XP_010409248.2  plexin-C1

    Related
    ENSCCCP00025013577.1, ENSCCCT00025016065.1
    Conserved Domains (5) summary
    smart00429
    Location:604 → 652
    IPT; ig-like, plexins, transcription factors
    cd00102
    Location:514 → 603
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    pfam01437
    Location:332 → 379
    PSI; Plexin repeat
    pfam08337
    Location:865 → 1389
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    cl15693
    Location:1 → 331
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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