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RUNX1T1 RUNX1 partner transcriptional co-repressor 1 [ Corvus cornix cornix ]

Gene ID: 104692752, updated on 3-Aug-2024

Summary

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Gene symbol
RUNX1T1
Gene description
RUNX1 partner transcriptional co-repressor 1
See related
EnsemblRapid:ENSCCCG00025003744
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See RUNX1T1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 2 NC_046333.1 (129370466..129485224, complement)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959651.1 (24276908..24389594)

Chromosome 2 - NC_046333.1Genomic Context describing neighboring genes Neighboring gene OTU deubiquitinase 6B Neighboring gene solute carrier family 26 member 7 Neighboring gene triple QxxK/R motif containing Neighboring gene CBY1 interacting BAR domain containing 1 Neighboring gene RNA binding motif protein 12B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CBFA2T1
Names
RUNX1 translocation partner 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046333.1 Reference ASM73873v5 Primary Assembly

    Range
    129370466..129485224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039548915.1 → XP_039404849.1  protein CBFA2T1 isoform X1

    Related
    ENSCCCP00025006953.1, ENSCCCT00025007666.1
    Conserved Domains (4) summary
    COG1390
    Location:443 → 514
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    pfam08788
    Location:337 → 403
    NHR2; NHR2 domain like
    pfam01753
    Location:515 → 551
    zf-MYND; MYND finger
    pfam07531
    Location:122 → 210
    TAFH; NHR1 homology to TAF

  2. XM_039548916.1 → XP_039404850.1  protein CBFA2T1 isoform X3

    Related
    ENSCCCP00025006972.1, ENSCCCT00025007699.1
    Conserved Domains (4) summary
    COG1390
    Location:423 → 494
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    pfam08788
    Location:317 → 383
    NHR2; NHR2 domain like
    pfam01753
    Location:495 → 531
    zf-MYND; MYND finger
    pfam07531
    Location:102 → 190
    TAFH; NHR1 homology to TAF

  3. XM_010404986.4 → XP_010403288.1  protein CBFA2T1 isoform X1

    See identical proteins and their annotated locations for XP_010403288.1

    Conserved Domains (4) summary
    COG1390
    Location:443 → 514
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    pfam08788
    Location:337 → 403
    NHR2; NHR2 domain like
    pfam01753
    Location:515 → 551
    zf-MYND; MYND finger
    pfam07531
    Location:122 → 210
    TAFH; NHR1 homology to TAF

  4. XM_010404992.4 → XP_010403294.1  protein CBFA2T1 isoform X5

    See identical proteins and their annotated locations for XP_010403294.1

    Conserved Domains (4) summary
    COG1390
    Location:406 → 477
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    pfam08788
    Location:300 → 366
    NHR2; NHR2 domain like
    pfam01753
    Location:478 → 514
    zf-MYND; MYND finger
    pfam07531
    Location:85 → 173
    TAFH; NHR1 homology to TAF

  5. XM_010404987.4 → XP_010403289.1  protein CBFA2T1 isoform X1

    See identical proteins and their annotated locations for XP_010403289.1

    Conserved Domains (4) summary
    COG1390
    Location:443 → 514
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    pfam08788
    Location:337 → 403
    NHR2; NHR2 domain like
    pfam01753
    Location:515 → 551
    zf-MYND; MYND finger
    pfam07531
    Location:122 → 210
    TAFH; NHR1 homology to TAF

  6. XM_019289280.3 → XP_019144825.1  protein CBFA2T1 isoform X5

    Conserved Domains (4) summary
    COG1390
    Location:406 → 477
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    pfam08788
    Location:300 → 366
    NHR2; NHR2 domain like
    pfam01753
    Location:478 → 514
    zf-MYND; MYND finger
    pfam07531
    Location:85 → 173
    TAFH; NHR1 homology to TAF

  7. XM_010404989.4 → XP_010403291.1  protein CBFA2T1 isoform X4

    See identical proteins and their annotated locations for XP_010403291.1

    Related
    ENSCCCP00025006940.1, ENSCCCT00025007652.1
    Conserved Domains (4) summary
    COG1390
    Location:416 → 487
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    pfam08788
    Location:310 → 376
    NHR2; NHR2 domain like
    pfam01753
    Location:488 → 524
    zf-MYND; MYND finger
    pfam07531
    Location:95 → 183
    TAFH; NHR1 homology to TAF

  8. XM_019289279.3 → XP_019144824.1  protein CBFA2T1 isoform X2

    Related
    ENSCCCP00025006929.1, ENSCCCT00025007640.1
    Conserved Domains (4) summary
    COG1390
    Location:429 → 500
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    pfam08788
    Location:323 → 389
    NHR2; NHR2 domain like
    pfam01753
    Location:501 → 537
    zf-MYND; MYND finger
    pfam07531
    Location:108 → 196
    TAFH; NHR1 homology to TAF

  9. XM_020584085.2 → XP_020439674.1  protein CBFA2T1 isoform X5

    Conserved Domains (4) summary
    COG1390
    Location:406 → 477
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    pfam08788
    Location:300 → 366
    NHR2; NHR2 domain like
    pfam01753
    Location:478 → 514
    zf-MYND; MYND finger
    pfam07531
    Location:85 → 173
    TAFH; NHR1 homology to TAF
Nucleotide Protein
Heading Accession and Version

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