U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LNX1 ligand of numb-protein X 1 [ Corvus cornix cornix ]

Gene ID: 104690631, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
LNX1
Gene description
ligand of numb-protein X 1
See related
EnsemblRapid:ENSCCCG00025004108
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
18
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 4 NC_046334.1 (46003534..46156539)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959540.1 (13145293..13298293)

Chromosome 4 - NC_046334.1Genomic Context describing neighboring genes Neighboring gene GS homeobox 2 Neighboring gene cysteine rich hydrophobic domain 2 Neighboring gene factor interacting with PAPOLA and CPSF1 Neighboring gene sec1 family domain containing 2 Neighboring gene uncharacterized LOC109144954

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase LNX

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046334.1 Reference ASM73873v5 Primary Assembly

    Range
    46003534..46156539
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019287081.3 → XP_019142626.1  E3 ubiquitin-protein ligase LNX isoform X1

  2. XM_019287080.3 → XP_019142625.1  E3 ubiquitin-protein ligase LNX isoform X1

  3. XM_010401674.4 → XP_010399976.1  E3 ubiquitin-protein ligase LNX isoform X1

    See identical proteins and their annotated locations for XP_010399976.1

    Conserved Domains (2) summary
    cd00992
    Location:693 → 777
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam00097
    Location:43 → 79
    zf-C3HC4; Zinc finger, C3HC4 type (RING finger)

  4. XM_010401679.4 → XP_010399981.1  E3 ubiquitin-protein ligase LNX isoform X4

    Conserved Domains (1) summary
    cd00992
    Location:573 → 657
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  5. XM_019287079.3 → XP_019142624.1  E3 ubiquitin-protein ligase LNX isoform X1

    Related
    ENSCCCP00025007506.1, ENSCCCT00025008481.1

  6. XM_019287082.3 → XP_019142627.1  E3 ubiquitin-protein ligase LNX isoform X2

    Related
    ENSCCCP00025007517.1, ENSCCCT00025008492.1

  7. XM_039551031.1 → XP_039406965.1  E3 ubiquitin-protein ligase LNX isoform X7

    Conserved Domains (1) summary
    cd00992
    Location:519 → 603
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  8. XM_010401678.4 → XP_010399980.1  E3 ubiquitin-protein ligase LNX isoform X3

    Related
    ENSCCCP00025007497.1, ENSCCCT00025008472.1
    Conserved Domains (1) summary
    cd00992
    Location:595 → 679
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  9. XM_010401680.4 → XP_010399982.1  E3 ubiquitin-protein ligase LNX isoform X6

    See identical proteins and their annotated locations for XP_010399982.1

    Related
    ENSCCCP00025007500.1, ENSCCCT00025008475.1
    Conserved Domains (1) summary
    cd00992
    Location:543 → 627
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  10. XM_019287084.3 → XP_019142629.1  E3 ubiquitin-protein ligase LNX isoform X7

    Conserved Domains (1) summary
    cd00992
    Location:519 → 603
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  11. XM_019287083.3 → XP_019142628.1  E3 ubiquitin-protein ligase LNX isoform X5

    Related
    ENSCCCP00025007489.1, ENSCCCT00025008464.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.