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PRIMPOL primase and DNA directed polymerase [ Corvus cornix cornix ]

Gene ID: 104690577, updated on 3-Aug-2024

Summary

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Gene symbol
PRIMPOL
Gene description
primase and DNA directed polymerase
See related
EnsemblRapid:ENSCCCG00025004225
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See PRIMPOL in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 4 NC_046334.1 (40614340..40630567)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959540.1 (7760350..7776265)

Chromosome 4 - NC_046334.1Genomic Context describing neighboring genes Neighboring gene interferon regulatory factor 2 Neighboring gene caspase 3 Neighboring gene centromere protein U Neighboring gene acyl-CoA synthetase long chain family member 1 Neighboring gene helt bHLH transcription factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA primase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed DNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in error-prone translesion synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in replication fork processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to UV IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed primase/polymerase protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046334.1 Reference ASM73873v5 Primary Assembly

    Range
    40614340..40630567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039550800.1 → XP_039406734.1  DNA-directed primase/polymerase protein isoform X1

    Related
    ENSCCCP00025007750.1, ENSCCCT00025008725.1
    Conserved Domains (2) summary
    pfam03121
    Location:405 → 467
    Herpes_UL52; Herpesviridae UL52/UL70 DNA primase
    cd22256
    Location:485 → 568
    PrimPol_RBD; C-terminal RPA-binding domain (RBD) of DNA-directed primase/polymerase protein and similar proteins

  2. XM_010401522.4 → XP_010399824.2  DNA-directed primase/polymerase protein isoform X1

    Conserved Domains (2) summary
    pfam03121
    Location:405 → 467
    Herpes_UL52; Herpesviridae UL52/UL70 DNA primase
    cd22256
    Location:485 → 568
    PrimPol_RBD; C-terminal RPA-binding domain (RBD) of DNA-directed primase/polymerase protein and similar proteins

  3. XM_010401523.2 → XP_010399825.2  DNA-directed primase/polymerase protein isoform X2

    Conserved Domains (2) summary
    pfam03121
    Location:307 → 369
    Herpes_UL52; Herpesviridae UL52/UL70 DNA primase
    cd22256
    Location:387 → 470
    PrimPol_RBD; C-terminal RPA-binding domain (RBD) of DNA-directed primase/polymerase protein and similar proteins
Nucleotide Protein
Heading Accession and Version

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