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LYST lysosomal trafficking regulator [ Phaethon lepturus (White-tailed tropicbird) ]

Gene ID: 104627529, updated on 3-Aug-2024

Summary

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Gene symbol
LYST
Gene description
lysosomal trafficking regulator
Locus tag
N335_01359
Gene type
protein coding
RefSeq status
MODEL
Organism
Phaethon lepturus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Phaethontimorphae; Phaethontiformes; Phaethontidae; Phaethon
Orthologs
human mouse all
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Genomic context

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See LYST in Genome Data Viewer
Location:
chromosome: Un
Exon count:
51
Annotation release Status Assembly Chr Location
100 current ASM68728v1 (GCF_000687285.1) Unplaced Scaffold NW_010515594.1 (17729..84886)

NW_010515594.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010515594.1 Unplaced Scaffold Reference ASM68728v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: lysosomal-trafficking regulator
Names
Lysosomal-trafficking regulator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phaethon lepturus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68728v1

Genomic

  1. NW_010515594.1 Reference ASM68728v1

    Range
    17729..84886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010295828.1 → XP_010294130.1  LOW QUALITY PROTEIN: lysosomal-trafficking regulator

    Conserved Domains (5) summary
    smart01026
    Location:3140 → 3430
    Beach; Beige/BEACH domain
    COG2319
    Location:3544 → 3807
    WD40; WD40 repeat [General function prediction only]
    cd01201
    Location:3020 → 3125
    PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
    sd00039
    Location:3536 → 3573
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:3537 → 3786
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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