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COL6A6 collagen type VI alpha 6 chain [ Mesitornis unicolor (brown roatelo) ]

Gene ID: 104539953, updated on 3-Aug-2024

Summary

Gene symbol
COL6A6
Gene description
collagen type VI alpha 6 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesitornis unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Mesitornithiformes; Mesitornithidae; Mesitornis
Orthologs
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Genomic context

Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
100 current ASM69576v1 (GCF_000695765.1) Unplaced Scaffold NW_010182031.1 (6216..61158)

NW_010182031.1Genomic Context describing neighboring genes Neighboring gene kunitz-type serine protease inhibitor 6-like Neighboring gene phosphoinositide 3-kinase regulatory subunit 4-like

Genomic regions, transcripts, and products

Genomic Sequence:
NW_010182031.1 Unplaced Scaffold Reference ASM69576v1

General protein information

Preferred Names
LOW QUALITY PROTEIN: collagen alpha-6(VI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesitornis unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69576v1

Genomic

  1. NW_010182031.1 Reference ASM69576v1

    Range
    6216..61158
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010183632.1XP_010181934.1  LOW QUALITY PROTEIN: collagen alpha-6(VI) chain

    Conserved Domains (6) summary
    pfam01391
    Location:14001457
    Collagen; Collagen triple helix repeat (20 copies)
    smart00327
    Location:12921364
    VWA; von Willebrand factor (vWF) type A domain
    cd01450
    Location:10091168
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cd01472
    Location:630790
    vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
    pfam00092
    Location:820992
    VWA; von Willebrand factor type A domain
    cl00057
    Location:43194
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...