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SYNM synemin [ Buceros rhinoceros silvestris ]

Gene ID: 104501490, updated on 3-Aug-2024

Summary

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Gene symbol
SYNM
Gene description
synemin
Locus tag
N320_12215
Gene type
protein coding
RefSeq status
MODEL
Organism
Buceros rhinoceros silvestris (sub-species: silvestris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Bucerotiformes; Bucerotidae; Buceros
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ASM71030v1 (GCF_000710305.1) Unplaced Scaffold NW_010394747.1 (26818..39686, complement)

NW_010394747.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010394747.1 Unplaced Scaffold Reference ASM71030v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables intermediate filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables vinculin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fast-twitch skeletal muscle fiber contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in costamere IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neurofilament cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synemin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Buceros rhinoceros silvestris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM71030v1

Genomic

  1. NW_010394747.1 Reference ASM71030v1

    Range
    26818..39686 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010145306.1 → XP_010143608.1  synemin

    UniProtKB/TrEMBL
    A0A091GQC3
    Conserved Domains (1) summary
    pfam00038
    Location:1 → 47
    Filament; Intermediate filament protein
Nucleotide Protein
Heading Accession and Version

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