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PMS1 PMS1 homolog 1, mismatch repair system component [ Pterocles gutturalis (yellow-throated sandgrouse) ]

Gene ID: 104472149, updated on 3-Aug-2024

Summary

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Gene symbol
PMS1
Gene description
PMS1 homolog 1, mismatch repair system component
Locus tag
N339_04973
Gene type
protein coding
RefSeq status
MODEL
Organism
Pterocles gutturalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Pterocliformes; Pteroclidae; Pterocles
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM69924v1 (GCF_000699245.1) Unplaced Scaffold NW_010106195.1 (2304..46807)

NW_010106195.1Genomic Context describing neighboring genes Neighboring gene myostatin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010106195.1 Unplaced Scaffold Reference ASM69924v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MutLalpha complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PMS1 protein homolog 1
Names
PMS1 protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pterocles gutturalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69924v1

Genomic

  1. NW_010106195.1 Reference ASM69924v1

    Range
    2304..46807
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010087710.1 → XP_010086012.1  PMS1 protein homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A093BXG1
    Conserved Domains (4) summary
    cd01390
    Location:574 → 638
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    cd03485
    Location:205 → 338
    MutL_Trans_hPMS_1_like; MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is ...
    TIGR00585
    Location:1 → 318
    mutl; DNA mismatch repair protein MutL
    pfam02518
    Location:17 → 145
    HATPase_c; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

  2. XM_010087713.1 → XP_010086015.1  PMS1 protein homolog 1 isoform X4

    UniProtKB/TrEMBL
    A0A093BXG1
    Conserved Domains (3) summary
    cd03485
    Location:205 → 338
    MutL_Trans_hPMS_1_like; MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is ...
    TIGR00585
    Location:1 → 318
    mutl; DNA mismatch repair protein MutL
    pfam02518
    Location:17 → 145
    HATPase_c; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

  3. XM_010087711.1 → XP_010086013.1  PMS1 protein homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A093BXG1
    Conserved Domains (4) summary
    cd01390
    Location:570 → 634
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    cd03485
    Location:205 → 334
    MutL_Trans_hPMS_1_like; MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is ...
    TIGR00585
    Location:1 → 314
    mutl; DNA mismatch repair protein MutL
    pfam02518
    Location:17 → 145
    HATPase_c; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

  4. XM_010087712.1 → XP_010086014.1  PMS1 protein homolog 1 isoform X3

    UniProtKB/TrEMBL
    A0A093BXG1
    Conserved Domains (4) summary
    cd01390
    Location:535 → 599
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    TIGR00585
    Location:1 → 279
    mutl; DNA mismatch repair protein MutL
    pfam02518
    Location:17 → 145
    HATPase_c; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
    cl02783
    Location:194 → 299
    TopoII_MutL_Trans; MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second ...
Nucleotide Protein
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