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CLDN18 claudin 18 [ Chaetura pelagica (chimney swift) ]

Gene ID: 104397834, updated on 3-Aug-2024

Summary

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Gene symbol
CLDN18
Gene description
claudin 18
Gene type
protein coding
RefSeq status
MODEL
Organism
Chaetura pelagica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Apodidae; Apodinae; Chaetura
Also known as
Claudin-18
Orthologs
human mouse all
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Genomic context

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See CLDN18 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ChaPel_1.0 (GCF_000747805.1) Unplaced Scaffold NW_009951806.1 (137160..155966, complement)

NW_009951806.1Genomic Context describing neighboring genes Neighboring gene alpha-1,4-N-acetylglucosaminyltransferase Neighboring gene SRY-box transcription factor 14 Neighboring gene crystallin gamma S

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009951806.1 Unplaced Scaffold Reference ChaPel_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chaetura pelagica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChaPel_1.0

Genomic

  1. NW_009951806.1 Reference ChaPel_1.0

    Range
    137160..155966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010007855.1 → XP_010006157.1  claudin-18 isoform X2

    Conserved Domains (2) summary
    cd12106
    Location:196 → 223
    PARMER_03128_N; N-terminal domain of PARMER_03128
    cl21598
    Location:7 → 187
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

  2. XM_010007849.1 → XP_010006151.1  claudin-18 isoform X1

    See identical proteins and their annotated locations for XP_010006151.1

    UniProtKB/TrEMBL
    A0A093B8Z4
    Conserved Domains (2) summary
    cd12106
    Location:196 → 223
    PARMER_03128_N; N-terminal domain of PARMER_03128
    cl21598
    Location:7 → 187
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
Heading Accession and Version

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