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VPS13B vacuolar protein sorting 13 homolog B [ Chaetura pelagica (chimney swift) ]

Gene ID: 104396592, updated on 3-Aug-2024

Summary

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Gene symbol
VPS13B
Gene description
vacuolar protein sorting 13 homolog B
Locus tag
M959_13863
Gene type
protein coding
RefSeq status
MODEL
Organism
Chaetura pelagica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Apodidae; Apodinae; Chaetura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
62
Annotation release Status Assembly Chr Location
100 current ChaPel_1.0 (GCF_000747805.1) Unplaced Scaffold NW_009970723.1 (9448703..9877893)

NW_009970723.1Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase 3 Neighboring gene odd-skipped related transciption factor 2 Neighboring gene cytochrome c oxidase subunit 6C Neighboring gene regulator of G protein signaling 22

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009970723.1 Unplaced Scaffold Reference ChaPel_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 13B
Names
Vacuolar protein sorting-associated protein 13B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chaetura pelagica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChaPel_1.0

Genomic

  1. NW_009970723.1 Reference ChaPel_1.0

    Range
    9448703..9877893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010006448.1 → XP_010004750.1  vacuolar protein sorting-associated protein 13B isoform X2

    Conserved Domains (4) summary
    pfam06650
    Location:2608 → 2688
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3713 → 3817
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:3 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3565 → 3711
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal

  2. XM_010006447.1 → XP_010004749.1  vacuolar protein sorting-associated protein 13B isoform X1

    Conserved Domains (4) summary
    pfam06650
    Location:2633 → 2713
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam09333
    Location:3738 → 3842
    ATG_C; Autophagy-related protein C terminal domain
    pfam12624
    Location:3 → 94
    Chorein_N; N-terminal region of Chorein or VPS13
    pfam16909
    Location:3590 → 3736
    VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
Nucleotide Protein
Heading Accession and Version

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