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PUDP pseudouridine 5'-phosphatase [ Tyto alba (common barn owl) ]

Gene ID: 104365725, updated on 3-Aug-2024

Summary

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Gene symbol
PUDP
Gene description
pseudouridine 5'-phosphatase
Locus tag
N341_07626
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881276.1 (6734377..6894837, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_010017152.1 (53915..100345, complement)

NW_024881276.1Genomic Context describing neighboring genes Neighboring gene protein kinase cAMP-dependent X-linked catalytic subunit Neighboring gene neuroligin 4 X-linked Neighboring gene uncharacterized LOC122152915 Neighboring gene steroid sulfatase Neighboring gene uncharacterized LOC116960157 Neighboring gene patatin like phospholipase domain containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pseudouridine-5'-phosphatase
Names
Pseudouridine-5'-monophosphatase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881276.1 Reference T.alba_DEE_v4.0

    Range
    6734377..6894837 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042788256.1 → XP_042644190.1  pseudouridine-5'-phosphatase isoform X1

    Conserved Domains (1) summary
    cd07529
    Location:19 → 207
    HAD_AtGPP-like; subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and Gpp2

  2. XM_042788257.1 → XP_042644191.1  pseudouridine-5'-phosphatase isoform X2

    Conserved Domains (1) summary
    cl21460
    Location:10 → 186
    HAD_like; Haloacid Dehalogenase-like Hydrolases

RNA

  1. XR_006164900.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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