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KLF12 KLF transcription factor 12 [ Tyto alba (common barn owl) ]

Gene ID: 104364715, updated on 3-Aug-2024

Summary

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Gene symbol
KLF12
Gene description
KLF transcription factor 12
Locus tag
N341_09476
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881321.1 (17053824..17300981, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009974982.1 (17598..48222, complement)

NW_024881321.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene progesterone immunomodulatory binding factor 1 Neighboring gene KLF transcription factor 5 Neighboring gene uncharacterized LOC116960384 Neighboring gene TBC1 domain family member 4 Neighboring gene COMM domain containing 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Krueppel-like factor 12
Names
Kruppel like factor 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881321.1 Reference T.alba_DEE_v4.0

    Range
    17053824..17300981 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042805795.1 → XP_042661729.1  Krueppel-like factor 12 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:317 → 429
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:347 → 369
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:391 → 416
    zf-H2C2_2; Zinc-finger double domain
    cd21441
    Location:23 → 219
    KLF12_N; N-terminal domain of Kruppel-like factor 12

  2. XM_042805794.1 → XP_042661728.1  Krueppel-like factor 12 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:317 → 429
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:347 → 369
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:391 → 416
    zf-H2C2_2; Zinc-finger double domain
    cd21441
    Location:23 → 219
    KLF12_N; N-terminal domain of Kruppel-like factor 12

  3. XM_042805799.1 → XP_042661733.1  Krueppel-like factor 12 isoform X4

    Conserved Domains (4) summary
    COG5189
    Location:232 → 370
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:293 → 315
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:337 → 362
    zf-H2C2_2; Zinc-finger double domain
    cd21441
    Location:23 → 219
    KLF12_N; N-terminal domain of Kruppel-like factor 12

  4. XM_042805797.1 → XP_042661731.1  Krueppel-like factor 12 isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:223 → 395
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:313 → 335
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:357 → 382
    zf-H2C2_2; Zinc-finger double domain
    cd21441
    Location:23 → 219
    KLF12_N; N-terminal domain of Kruppel-like factor 12

  5. XM_042805796.1 → XP_042661730.1  Krueppel-like factor 12 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:317 → 429
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:347 → 369
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:391 → 416
    zf-H2C2_2; Zinc-finger double domain
    cd21441
    Location:23 → 219
    KLF12_N; N-terminal domain of Kruppel-like factor 12

  6. XM_032987614.2 → XP_032843505.1  Krueppel-like factor 12 isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:317 → 429
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:347 → 369
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:391 → 416
    zf-H2C2_2; Zinc-finger double domain
    cd21441
    Location:23 → 219
    KLF12_N; N-terminal domain of Kruppel-like factor 12

  7. XM_042805798.1 → XP_042661732.1  Krueppel-like factor 12 isoform X3

    Conserved Domains (3) summary
    sd00017
    Location:347 → 369
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:345 → 369
    zf-C2H2; Zinc finger, C2H2 type
    cd21441
    Location:23 → 219
    KLF12_N; N-terminal domain of Kruppel-like factor 12
Nucleotide Protein
Heading Accession and Version

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