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PIF1 PIF1 5'-to-3' DNA helicase [ Tyto alba (common barn owl) ]

Gene ID: 104361958, updated on 3-Aug-2024

Summary

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Gene symbol
PIF1
Gene description
PIF1 5'-to-3' DNA helicase
Locus tag
N341_00422
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881272.1 (23013139..23022106, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_010002666.1 (568..5159)

NW_024881272.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116963518 Neighboring gene ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 Neighboring gene ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 Neighboring gene EBNA1 binding protein 2 Neighboring gene cilia and flagella associated protein 144 Neighboring gene cilia and flagella associated protein 57

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent DNA helicase PIF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881272.1 Reference T.alba_DEE_v4.0

    Range
    23013139..23022106 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042804122.1 → XP_042660056.1  ATP-dependent DNA helicase PIF1 isoform X1

    Conserved Domains (2) summary
    COG0507
    Location:129 → 558
    RecD; ATP-dependent exoDNAse (exonuclease V), alpha subunit, helicase superfamily I [Replication, recombination and repair]
    cd18037
    Location:165 → 336
    DEXSc_Pif1_like; DEAD-box helicase domain of Pif1

  2. XM_042804126.1 → XP_042660060.1  ATP-dependent DNA helicase PIF1 isoform X2

    Conserved Domains (1) summary
    cd18037
    Location:165 → 336
    DEXSc_Pif1_like; DEAD-box helicase domain of Pif1
Nucleotide Protein
Heading Accession and Version

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