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MITF melanocyte inducing transcription factor [ Tyto alba (common barn owl) ]

Gene ID: 104359057, updated on 3-Aug-2024

Summary

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Gene symbol
MITF
Gene description
melanocyte inducing transcription factor
Locus tag
N341_01273
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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See MITF in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881304.1 (14428016..14540106)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009991511.1 (53617..109187)

NW_024881304.1Genomic Context describing neighboring genes Neighboring gene leiomodin 3 Neighboring gene FERM domain containing 4B Neighboring gene 2-epi-5-epi-valiolone synthase Neighboring gene uncharacterized LOC104367530

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in melanocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
microphthalmia-associated transcription factor
Names
melanogenesis associated transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881304.1 Reference T.alba_DEE_v4.0

    Range
    14428016..14540106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042799568.1 → XP_042655502.1  microphthalmia-associated transcription factor isoform X1

    UniProtKB/TrEMBL
    A0A1C8Y7P5
    Conserved Domains (1) summary
    cd18926
    Location:299 → 402
    bHLHzip_MITF; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in microphthalmia-associated transcription factor (MITF) and similar proteins

  2. XM_042799569.1 → XP_042655503.1  microphthalmia-associated transcription factor isoform X1

    UniProtKB/TrEMBL
    A0A1C8Y7P5
    Conserved Domains (1) summary
    cd18926
    Location:299 → 402
    bHLHzip_MITF; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in microphthalmia-associated transcription factor (MITF) and similar proteins

  3. XM_042799567.1 → XP_042655501.1  microphthalmia-associated transcription factor isoform X1

    UniProtKB/TrEMBL
    A0A1C8Y7P5
    Conserved Domains (1) summary
    cd18926
    Location:299 → 402
    bHLHzip_MITF; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in microphthalmia-associated transcription factor (MITF) and similar proteins

  4. XM_042799570.1 → XP_042655504.1  microphthalmia-associated transcription factor isoform X2

    UniProtKB/TrEMBL
    A0A1C8Y7P5
    Conserved Domains (1) summary
    cd18926
    Location:293 → 396
    bHLHzip_MITF; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in microphthalmia-associated transcription factor (MITF) and similar proteins

  5. XM_042799571.1 → XP_042655505.1  microphthalmia-associated transcription factor isoform X4

    UniProtKB/TrEMBL
    A0A1C8Y7S7
    Conserved Domains (1) summary
    cd18926
    Location:271 → 374
    bHLHzip_MITF; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in microphthalmia-associated transcription factor (MITF) and similar proteins

  6. XM_042799572.1 → XP_042655506.1  microphthalmia-associated transcription factor isoform X6

    UniProtKB/TrEMBL
    A0A1C8Y7S7
    Conserved Domains (1) summary
    cd18926
    Location:265 → 368
    bHLHzip_MITF; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in microphthalmia-associated transcription factor (MITF) and similar proteins

  7. XM_032985708.2 → XP_032841599.1  microphthalmia-associated transcription factor isoform X5

    UniProtKB/TrEMBL
    A0A1C8Y7P4
    Conserved Domains (3) summary
    cd18926
    Location:271 → 374
    bHLHzip_MITF; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in microphthalmia-associated transcription factor (MITF) and similar proteins
    pfam11851
    Location:368 → 493
    DUF3371; Domain of unknown function (DUF3371)
    pfam15951
    Location:27 → 165
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

  8. XM_032985709.2 → XP_032841600.1  microphthalmia-associated transcription factor isoform X7

    UniProtKB/TrEMBL
    A0A1C8Y7P4
    Conserved Domains (3) summary
    cd18926
    Location:265 → 368
    bHLHzip_MITF; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in microphthalmia-associated transcription factor (MITF) and similar proteins
    pfam11851
    Location:362 → 487
    DUF3371; Domain of unknown function (DUF3371)
    pfam15951
    Location:27 → 165
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

  9. XM_009964751.3 → XP_009963053.2  microphthalmia-associated transcription factor isoform X9

    UniProtKB/TrEMBL
    A0A1C8Y7P6
    Conserved Domains (3) summary
    cd18926
    Location:237 → 340
    bHLHzip_MITF; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in microphthalmia-associated transcription factor (MITF) and similar proteins
    pfam11851
    Location:334 → 459
    DUF3371; Domain of unknown function (DUF3371)
    pfam15951
    Location:27 → 171
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

  10. XM_032985710.2 → XP_032841601.1  microphthalmia-associated transcription factor isoform X8

    UniProtKB/TrEMBL
    A0A093F262
    Conserved Domains (3) summary
    cd18926
    Location:248 → 351
    bHLHzip_MITF; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in microphthalmia-associated transcription factor (MITF) and similar proteins
    pfam11851
    Location:345 → 470
    DUF3371; Domain of unknown function (DUF3371)
    pfam15951
    Location:4 → 142
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

  11. XM_032985707.2 → XP_032841598.2  microphthalmia-associated transcription factor isoform X3

    UniProtKB/TrEMBL
    A0A1C8Y7P4
    Conserved Domains (1) summary
    cd18926
    Location:283 → 386
    bHLHzip_MITF; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in microphthalmia-associated transcription factor (MITF) and similar proteins

  12. XM_009964750.3 → XP_009963052.3  microphthalmia-associated transcription factor isoform X10

    UniProtKB/TrEMBL
    A0A1C8Y7P4
    Conserved Domains (1) summary
    cd18926
    Location:277 → 380
    bHLHzip_MITF; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in microphthalmia-associated transcription factor (MITF) and similar proteins
Nucleotide Protein
Heading Accession and Version

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