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ATG3 autophagy related 3 [ Tyto alba (common barn owl) ]

Gene ID: 104357980, updated on 3-Aug-2024

Summary

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Gene symbol
ATG3
Gene description
autophagy related 3
Locus tag
N341_12161
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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See ATG3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881276.1 (53097705..53121961, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009987278.1 (51605..72714, complement)

NW_024881276.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 19 member 2 Neighboring gene coagulation factor V Neighboring gene solute carrier family 35 member A5 Neighboring gene coiled-coil domain containing 80

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Atg8-family ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like-conjugating enzyme ATG3
Names
Ubiquitin-like-conjugating enzyme ATG3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881276.1 Reference T.alba_DEE_v4.0

    Range
    53097705..53121961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042788791.1 → XP_042644725.1  ubiquitin-like-conjugating enzyme ATG3

    UniProtKB/TrEMBL
    A0A093ERS0
    Conserved Domains (2) summary
    pfam03986
    Location:8 → 135
    Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
    pfam10381
    Location:286 → 310
    Autophagy_C; Autophagocytosis associated protein C-terminal
Nucleotide Protein
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