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CCDC39 coiled-coil domain 39 molecular ruler complex subunit [ Tyto alba (common barn owl) ]

Gene ID: 104357319, updated on 3-Aug-2024

Summary

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Gene symbol
CCDC39
Gene description
coiled-coil domain 39 molecular ruler complex subunit
Locus tag
N341_01193
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881262.1 (9522902..9546200, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009984626.1 (207..22093)

NW_024881262.1Genomic Context describing neighboring genes Neighboring gene peroxisomal biogenesis factor 5 like Neighboring gene tetratricopeptide repeat domain 14 Neighboring gene FMR1 autosomal homolog 1 Neighboring gene DnaJ heat shock protein family (Hsp40) member C19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cilium movement IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cilium-dependent cell motility IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inner dynein arm assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil domain-containing protein 39
Names
Coiled-coil domain-containing protein 39
coiled-coil domain containing 39

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881262.1 Reference T.alba_DEE_v4.0

    Range
    9522902..9546200 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033006442.2 → XP_032862333.2  coiled-coil domain-containing protein 39 isoform X2

    UniProtKB/TrEMBL
    A0A093GUQ7
    Conserved Domains (2) summary
    COG1196
    Location:75 → 856
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl27170
    Location:29 → 110
    DUF460; Protein of unknown function (DUF460)

  2. XM_033006443.2 → XP_032862334.2  coiled-coil domain-containing protein 39 isoform X3

    UniProtKB/TrEMBL
    A0A093GUQ7
    Conserved Domains (1) summary
    COG1196
    Location:34 → 816
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_033006444.2 → XP_032862335.2  coiled-coil domain-containing protein 39 isoform X4

    Conserved Domains (2) summary
    COG1196
    Location:184 → 791
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG1579
    Location:27 → 138
    COG1579; Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only]

  4. XM_033006441.2 → XP_032862332.2  coiled-coil domain-containing protein 39 isoform X1

    Conserved Domains (1) summary
    COG1196
    Location:53 → 865
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
Heading Accession and Version

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