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SPON1 spondin 1 [ Tyto alba (common barn owl) ]

Gene ID: 104356077, updated on 3-Aug-2024

Summary

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Gene symbol
SPON1
Gene description
spondin 1
Locus tag
N341_03887
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Also known as
Spondin-1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881329.1 (11248316..11441208, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_010012106.1 (4551..12224)

NW_024881329.1Genomic Context describing neighboring genes Neighboring gene olfactomedin like 1 Neighboring gene synaptotagmin 9 Neighboring gene chromosome unknown C11orf91 homolog Neighboring gene KIAA1549 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spondin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881329.1 Reference T.alba_DEE_v4.0

    Range
    11248316..11441208 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033006905.2 → XP_032862796.1  spondin-1

    Conserved Domains (4) summary
    cd08544
    Location:38 → 177
    Reeler; the N-terminal domain of reelin, F-spondin, and a variety of other proteins
    pfam00090
    Location:557 → 605
    TSP_1; Thrombospondin type 1 domain
    pfam06468
    Location:200 → 387
    Spond_N; Spondin_N
    pfam19028
    Location:664 → 715
    TSP1_spondin; Spondin-like TSP1 domain
Nucleotide Protein
Heading Accession and Version

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