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COL5A2 collagen type V alpha 2 chain [ Opisthocomus hoazin ]

Gene ID: 104328414, updated on 3-Aug-2024

Summary

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Gene symbol
COL5A2
Gene description
collagen type V alpha 2 chain
Locus tag
N306_03183
Gene type
protein coding
RefSeq status
MODEL
Organism
Opisthocomus hoazin
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Opisthocomiformes; Opisthocomidae; Opisthocomus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
54
Annotation release Status Assembly Chr Location
100 current ASM69207v1 (GCF_000692075.1) Unplaced Scaffold NW_009900928.1 (838423..948425)

NW_009900928.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 40 member 1 Neighboring gene WD repeat domain 75 Neighboring gene collagen type III alpha 1 chain Neighboring gene GULP PTB domain containing engulfment adaptor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009900928.1 Unplaced Scaffold Reference ASM69207v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-2(V) chain
Names
Collagen alpha-2(V) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Opisthocomus hoazin Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69207v1

Genomic

  1. NW_009900928.1 Reference ASM69207v1

    Range
    838423..948425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009933433.1 → XP_009931735.1  collagen alpha-2(V) chain

    Conserved Domains (3) summary
    pfam01391
    Location:460 → 519
    Collagen; Collagen triple helix repeat (20 copies)
    smart00214
    Location:42 → 97
    VWC; von Willebrand factor (vWF) type C domain
    pfam01410
    Location:1268 → 1494
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein
Heading Accession and Version

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