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DSCAM DS cell adhesion molecule [ Charadrius vociferus (killdeer) ]

Gene ID: 104292047, updated on 3-Aug-2024

Summary

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Gene symbol
DSCAM
Gene description
DS cell adhesion molecule
Locus tag
N301_07347
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009649936.1 (2744923..3158883, complement)

NW_009649936.1Genomic Context describing neighboring genes Neighboring gene immunoglobulin superfamily member 5 Neighboring gene Purkinje cell protein 4 Neighboring gene beta-secretase 2 Neighboring gene FAM3 metabolism regulating signaling molecule B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009649936.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite self-avoidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Down syndrome cell adhesion molecule

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009649936.1 Reference ASM70802v2

    Range
    2744923..3158883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009891369.1 → XP_009889671.1  Down syndrome cell adhesion molecule

    UniProtKB/TrEMBL
    A0A0A0AUT6
    Conserved Domains (9) summary
    cd00096
    Location:421 → 490
    Ig; Immunoglobulin domain
    cd05734
    Location:704 → 781
    Ig7_DSCAM; Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)
    cd05735
    Location:799 → 886
    Ig8_DSCAM; Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)
    smart00408
    Location:1299 → 1363
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:41 → 110
    IG; Immunoglobulin
    smart00410
    Location:233 → 307
    IG_like; Immunoglobulin like
    cd00063
    Location:882 → 976
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:687 → 781
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:235 → 298
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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