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RABGEF1 RAB guanine nucleotide exchange factor 1 [ Apaloderma vittatum (bar-tailed trogon) ]

Gene ID: 104279533, updated on 3-Aug-2024

Summary

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Gene symbol
RABGEF1
Gene description
RAB guanine nucleotide exchange factor 1
Locus tag
N311_04613
Gene type
protein coding
RefSeq status
MODEL
Organism
Apaloderma vittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Trogoniformes; Trogonidae; Apaloderma
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM70340v1 (GCF_000703405.1) Unplaced Scaffold NW_009736080.1 (7670..20459)

NW_009736080.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009736080.1 Unplaced Scaffold Reference ASM70340v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rab5 GDP/GTP exchange factor
Names
Rab5 GDP/GTP exchange factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apaloderma vittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70340v1

Genomic

  1. NW_009736080.1 Reference ASM70340v1

    Range
    7670..20459
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009876848.1 → XP_009875150.1  rab5 GDP/GTP exchange factor isoform X3

    See identical proteins and their annotated locations for XP_009875150.1

    UniProtKB/TrEMBL
    A0A091NRR5
    Conserved Domains (2) summary
    pfam01754
    Location:17 → 40
    zf-A20; A20-like zinc finger
    pfam02204
    Location:270 → 370
    VPS9; Vacuolar sorting protein 9 (VPS9) domain

  2. XM_009876847.1 → XP_009875149.1  rab5 GDP/GTP exchange factor isoform X2

    Conserved Domains (2) summary
    pfam01754
    Location:17 → 40
    zf-A20; A20-like zinc finger
    pfam02204
    Location:271 → 371
    VPS9; Vacuolar sorting protein 9 (VPS9) domain

  3. XM_009876846.1 → XP_009875148.1  rab5 GDP/GTP exchange factor isoform X1

    Conserved Domains (2) summary
    pfam01754
    Location:17 → 40
    zf-A20; A20-like zinc finger
    pfam02204
    Location:317 → 417
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
Nucleotide Protein
Heading Accession and Version

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