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SMOC1 SPARC related modular calcium binding 1 [ Cariama cristata (Red-legged seriema) ]

Gene ID: 104165771, updated on 3-Aug-2024

Summary

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Gene symbol
SMOC1
Gene description
SPARC related modular calcium binding 1
Locus tag
N322_05305
Gene type
protein coding
RefSeq status
MODEL
Organism
Cariama cristata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Cariamiformes; Cariamidae; Cariama
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM69053v1 (GCF_000690535.1) Unplaced Scaffold NW_009630433.1 (7880..95034, complement)

NW_009630433.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009630433.1 Unplaced Scaffold Reference ASM69053v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular matrix binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heparin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SPARC-related modular calcium-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cariama cristata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69053v1

Genomic

  1. NW_009630433.1 Reference ASM69053v1

    Range
    7880..95034 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009705510.1 → XP_009703812.1  SPARC-related modular calcium-binding protein 1

    See identical proteins and their annotated locations for XP_009703812.1

    UniProtKB/TrEMBL
    A0A091M768
    Conserved Domains (5) summary
    smart00280
    Location:11 → 56
    KAZAL; Kazal type serine protease inhibitors
    cd00191
    Location:195 → 261
    TY; Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
    cd00252
    Location:333 → 394
    SPARC_EC; SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate ...
    pfam00086
    Location:64 → 127
    Thyroglobulin_1; Thyroglobulin type-1 repeat
    pfam16597
    Location:128 → 186
    Thyroglob_assoc; Thyroglobulin_1 repeat associated disordered domain
Nucleotide Protein
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