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CAPN6 calpain 6 [ Struthio camelus (African ostrich) ]

Gene ID: 104150934, updated on 23-Aug-2024

Summary

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Gene symbol
CAPN6
Gene description
calpain 6
Locus tag
N308_04740
See related
Ensembl:ENSSCUG00000018528
Gene type
protein coding
RefSeq status
MODEL
Organism
Struthio camelus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Struthioniformes; Struthionidae; Struthio
Also known as
Calpain-5
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current ASM69896v1 (GCF_000698965.1) Unplaced Scaffold NW_009272019.1 (2227214..2291939)

NW_009272019.1Genomic Context describing neighboring genes Neighboring gene ALG13 UDP-N-acetylglucosaminyltransferase subunit Neighboring gene doublecortin Neighboring gene p21 (RAC1) activated kinase 3 Neighboring gene chordin like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009272019.1 Unplaced Scaffold Reference ASM69896v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Struthio camelus australis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69896v1 Primary Assembly

Genomic

  1. NW_009272019.1 Reference ASM69896v1 Primary Assembly

    Range
    2227214..2291939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009685462.1 → XP_009683757.1  calpain-6

    See identical proteins and their annotated locations for XP_009683757.1

    UniProtKB/TrEMBL
    A0A093HVA8
    Related
    ENSSCUP00000025261.1, ENSSCUT00000033494.1
    Conserved Domains (3) summary
    cd04046
    Location:517 → 641
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:354 → 495
    Calpain_III; Calpain large subunit, domain III

  2. XM_009685455.1 → XP_009683750.1  calpain-6

    See identical proteins and their annotated locations for XP_009683750.1

    UniProtKB/TrEMBL
    A0A093HVA8
    Related
    ENSSCUP00000025262.1, ENSSCUT00000033495.1
    Conserved Domains (3) summary
    cd04046
    Location:517 → 641
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:354 → 495
    Calpain_III; Calpain large subunit, domain III

  3. XM_009685459.1 → XP_009683754.1  calpain-6

    See identical proteins and their annotated locations for XP_009683754.1

    UniProtKB/TrEMBL
    A0A093HVA8
    Conserved Domains (3) summary
    cd04046
    Location:517 → 641
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:354 → 495
    Calpain_III; Calpain large subunit, domain III

  4. XM_009685457.1 → XP_009683752.1  calpain-6

    See identical proteins and their annotated locations for XP_009683752.1

    UniProtKB/TrEMBL
    A0A093HVA8
    Conserved Domains (3) summary
    cd04046
    Location:517 → 641
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:354 → 495
    Calpain_III; Calpain large subunit, domain III

  5. XM_009685458.1 → XP_009683753.1  calpain-6

    See identical proteins and their annotated locations for XP_009683753.1

    UniProtKB/TrEMBL
    A0A093HVA8
    Conserved Domains (3) summary
    cd04046
    Location:517 → 641
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:354 → 495
    Calpain_III; Calpain large subunit, domain III

  6. XM_009685461.1 → XP_009683756.1  calpain-6

    See identical proteins and their annotated locations for XP_009683756.1

    UniProtKB/TrEMBL
    A0A093HVA8
    Conserved Domains (3) summary
    cd04046
    Location:517 → 641
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:354 → 495
    Calpain_III; Calpain large subunit, domain III

  7. XM_009685456.1 → XP_009683751.1  calpain-6

    See identical proteins and their annotated locations for XP_009683751.1

    UniProtKB/TrEMBL
    A0A093HVA8
    Conserved Domains (3) summary
    cd04046
    Location:517 → 641
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:354 → 495
    Calpain_III; Calpain large subunit, domain III
Nucleotide Protein
Heading Accession and Version

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