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SETDB2 SET domain bifurcated histone lysine methyltransferase 2 [ Struthio camelus (African ostrich) ]

Gene ID: 104146560, updated on 23-Aug-2024

Summary

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Gene symbol
SETDB2
Gene description
SET domain bifurcated histone lysine methyltransferase 2
Locus tag
N308_12943
See related
Ensembl:ENSSCUG00000010403
Gene type
protein coding
RefSeq status
MODEL
Organism
Struthio camelus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Struthioniformes; Struthionidae; Struthio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current ASM69896v1 (GCF_000698965.1) Unplaced Scaffold NW_009271497.1 (2685019..2704213, complement)

NW_009271497.1Genomic Context describing neighboring genes Neighboring gene RCC1 and BTB domain containing protein 1 Neighboring gene PHD finger protein 11 Neighboring gene calcium binding protein 39 like Neighboring gene cytidine and dCMP deaminase domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009271497.1 Unplaced Scaffold Reference ASM69896v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterochromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA methylation-dependent heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase SETDB2
Names
Histone-lysine N-methyltransferase SETDB2
SET domain bifurcated 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Struthio camelus australis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69896v1 Primary Assembly

Genomic

  1. NW_009271497.1 Reference ASM69896v1 Primary Assembly

    Range
    2685019..2704213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009678643.1 → XP_009676938.1  histone-lysine N-methyltransferase SETDB2

    UniProtKB/TrEMBL
    A0A093HND6
    Related
    ENSSCUP00000014120.1, ENSSCUT00000018532.1
    Conserved Domains (4) summary
    smart00317
    Location:627 → 705
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    cd01395
    Location:174 → 234
    HMT_MBD; Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated ...
    pfam05033
    Location:256 → 370
    Pre-SET; Pre-SET motif
    cl13996
    Location:463 → 509
    MPN; Mpr1p, Pad1p N-terminal (MPN) domains
Nucleotide Protein
Heading Accession and Version

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