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COL4A2 collagen type IV alpha 2 chain [ Egretta garzetta (little egret) ]

Gene ID: 104132467, updated on 3-Aug-2024

Summary

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Gene symbol
COL4A2
Gene description
collagen type IV alpha 2 chain
Locus tag
Z169_03147
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
48
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009260675.1 (1710838..1821889, complement)

NW_009260675.1Genomic Context describing neighboring genes Neighboring gene NAD(P)HX dehydratase Neighboring gene RAB20, member RAS oncogene family Neighboring gene collagen type IV alpha 1 chain Neighboring gene insulin receptor substrate 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009260675 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: collagen alpha-2(IV) chain
Names
Collagen alpha-2(IV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009260675.1 Reference ASM68718v1 Primary Assembly

    Range
    1710838..1821889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035901165.1 → XP_035757058.1  LOW QUALITY PROTEIN: collagen alpha-2(IV) chain

    Conserved Domains (3) summary
    pfam09606
    Location:1138 → 1415
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam01391
    Location:819 → 875
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1596 → 1704
    C4; C-terminal tandem repeated domain in type 4 procollagen
Nucleotide Protein
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