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LLGL2 LLGL scribble cell polarity complex component 2 [ Phalacrocorax carbo (great cormorant) ]

Gene ID: 104052919, updated on 3-Aug-2024

Summary

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Gene symbol
LLGL2
Gene description
LLGL scribble cell polarity complex component 2
Locus tag
N336_09977
Gene type
protein coding
RefSeq status
MODEL
Organism
Phalacrocorax carbo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Suliformes; Phalacrocoracidae; Phalacrocorax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2024_04 current bPhaCar2.1 (GCF_963921805.1) 16 NC_087528.1 (1672417..1706856, complement)
100 previous assembly ASM70892v1 (GCF_000708925.1) Unplaced Scaffold NW_009129501.1 (6693..33763)

Chromosome 16 - NC_087528.1Genomic Context describing neighboring genes Neighboring gene RecQ like helicase 5 Neighboring gene small integral membrane protein 5 Neighboring gene myosin XVB Neighboring gene tRNA splicing endonuclease subunit 54 Neighboring gene melanin-concentrating hormone receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables myosin II binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cortical actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of spindle orientation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of establishment or maintenance of cell polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cortical actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LLGL scribble cell polarity complex component 2
Names
LLGL2, scribble cell polarity complex component
Lethal(2) giant larvae protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963921805.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bPhaCar2.1

Genomic

  1. NC_087528.1 Reference bPhaCar2.1

    Range
    1672417..1706856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064467315.1 → XP_064323385.1  LLGL scribble cell polarity complex component 2 isoform X2

  2. XM_064467316.1 → XP_064323386.1  LLGL scribble cell polarity complex component 2 isoform X2

  3. XM_009514276.2 → XP_009512571.1  LLGL scribble cell polarity complex component 2 isoform X2

    Conserved Domains (4) summary
    COG2319
    Location:36 → 262
    WD40; WD40 repeat [General function prediction only]
    pfam08366
    Location:273 → 371
    LLGL; LLGL2
    sd00039
    Location:36 → 72
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:29 → 253
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_064467314.1 → XP_064323384.1  LLGL scribble cell polarity complex component 2 isoform X1

  5. XM_064467317.1 → XP_064323387.1  LLGL scribble cell polarity complex component 2 isoform X3

  6. XM_064467318.1 → XP_064323388.1  LLGL scribble cell polarity complex component 2 isoform X4

Nucleotide Protein
Heading Accession and Version

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