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CHD2 chromodomain helicase DNA binding protein 2 [ Phalacrocorax carbo (great cormorant) ]

Gene ID: 104045895, updated on 3-Aug-2024

Summary

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Gene symbol
CHD2
Gene description
chromodomain helicase DNA binding protein 2
Locus tag
N336_02434
Gene type
protein coding
RefSeq status
MODEL
Organism
Phalacrocorax carbo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Suliformes; Phalacrocoracidae; Phalacrocorax
Orthologs
human mouse all
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Genomic context

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See CHD2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
48
Annotation release Status Assembly Chr Location
RS_2024_04 current bPhaCar2.1 (GCF_963921805.1) 7 NC_087519.1 (7352091..7437568, complement)
100 previous assembly ASM70892v1 (GCF_000708925.1) Unplaced Scaffold NW_009152801.1 (12830..51694, complement)

Chromosome 7 - NC_087519.1Genomic Context describing neighboring genes Neighboring gene multiple C2 and transmembrane domain containing 2 Neighboring gene repulsive guidance molecule BMP co-receptor a Neighboring gene uncharacterized LOC135314271 Neighboring gene family with sequence similarity 174 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 2
Names
Chromodomain-helicase-DNA-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963921805.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bPhaCar2.1

Genomic

  1. NC_087519.1 Reference bPhaCar2.1

    Range
    7352091..7437568 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064456172.1 → XP_064312242.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A093R6G1

  2. XM_064456173.1 → XP_064312243.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A093R6G1

  3. XM_064456171.1 → XP_064312241.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A093R6G1

  4. XM_064456176.1 → XP_064312246.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A093R6G1

  5. XM_064456175.1 → XP_064312245.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A093R6G1

  6. XM_064456174.1 → XP_064312244.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A093R6G1

  7. XM_064456178.1 → XP_064312248.1  chromodomain-helicase-DNA-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A093R6G1

  8. XM_064456168.1 → XP_064312238.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A093R6G1

  9. XM_064456170.1 → XP_064312240.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A093R6G1

  10. XM_064456177.1 → XP_064312247.1  chromodomain-helicase-DNA-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A093R6G1

  11. XM_064456179.1 → XP_064312249.1  chromodomain-helicase-DNA-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A093R6G1
Nucleotide Protein
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