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C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Phalacrocorax carbo (great cormorant) ]

Gene ID: 104041837, updated on 3-Aug-2024

Summary

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Gene symbol
C1GALT1
Gene description
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Locus tag
N336_05709
Gene type
protein coding
RefSeq status
MODEL
Organism
Phalacrocorax carbo
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Suliformes; Phalacrocoracidae; Phalacrocorax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_04 current bPhaCar2.1 (GCF_963921805.1) 2 NC_087514.1 (139659728..139677407, complement)
100 previous assembly ASM70892v1 (GCF_000708925.1) Unplaced Scaffold NW_009122728.1 (1713..7140)

Chromosome 2 - NC_087514.1Genomic Context describing neighboring genes Neighboring gene meiosis regulator for oocyte development Neighboring gene collagen type XXVIII alpha 1 chain Neighboring gene asparagine synthetase (glutamine-hydrolyzing) Neighboring gene tachykinin precursor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Names
Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963921805.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bPhaCar2.1

Genomic

  1. NC_087514.1 Reference bPhaCar2.1

    Range
    139659728..139677407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064444560.1 → XP_064300630.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    UniProtKB/TrEMBL
    A0A093PC45

  2. XM_064444563.1 → XP_064300633.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    UniProtKB/TrEMBL
    A0A093PC45

  3. XM_064444561.1 → XP_064300631.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    UniProtKB/TrEMBL
    A0A093PC45
Nucleotide Protein
Heading Accession and Version

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