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XRCC5 X-ray repair cross complementing 5 [ Nipponia nippon (crested ibis) ]

Gene ID: 104019009, updated on 3-Aug-2024

Summary

Gene symbol
XRCC5
Gene description
X-ray repair cross complementing 5
Locus tag
Y956_05813
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
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Genomic context

Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_008998364.1 (6087995..6139988)

NW_008998364.1Genomic Context describing neighboring genes Neighboring gene peroxisomal trans-2-enoyl-CoA reductase Neighboring gene transmembrane protein 169 Neighboring gene membrane associated ring-CH-type finger 4 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1

Genomic regions, transcripts, and products

Genomic Sequence:
NW_008998364.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in cellular response to X-ray IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in cellular response to gamma radiation IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in double-strand break repair via nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in telomere maintenance IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of Ku70:Ku80 complex IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
X-ray repair cross-complementing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_008998364.1 Reference ASM70822v1 Primary Assembly

    Range
    6087995..6139988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009472229.1XP_009470504.1  X-ray repair cross-complementing protein 5

    UniProtKB/TrEMBL
    A0A091ULD0
    Conserved Domains (3) summary
    cd00873
    Location:224519
    KU80; Ku-core domain, Ku80 subfamily; Ku80 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the ...
    pfam08785
    Location:574686
    Ku_PK_bind; Ku C terminal domain like
    cl00057
    Location:1224
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...