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PCDH1 protocadherin 1 [ Nipponia nippon (crested ibis) ]

Gene ID: 104016593, updated on 3-Aug-2024

Summary

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Gene symbol
PCDH1
Gene description
protocadherin 1
Locus tag
Y956_14161
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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See PCDH1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_009001659.1 (7349089..7396183, complement)

NW_009001659.1Genomic Context describing neighboring genes Neighboring gene endothelial cell surface expressed chemotaxis and apoptosis regulator Neighboring gene protocadherin 12 Neighboring gene PCTP-like protein Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009001659.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-1
Names
Protocadherin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_009001659.1 Reference ASM70822v1 Primary Assembly

    Range
    7349089..7396183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009469501.1 → XP_009467776.1  protocadherin-1

    UniProtKB/TrEMBL
    A0A091VHC5
    Conserved Domains (3) summary
    cd11304
    Location:477 → 573
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08374
    Location:780 → 990
    Protocadherin; Protocadherin
    cl09101
    Location:25 → 103
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

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