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SF3B3 splicing factor 3b subunit 3 [ Aptenodytes forsteri (emperor penguin) ]

Gene ID: 103908411, updated on 3-Aug-2024

Summary

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Gene symbol
SF3B3
Gene description
splicing factor 3b subunit 3
Locus tag
AS27_01871
Gene type
protein coding
RefSeq status
MODEL
Organism
Aptenodytes forsteri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Aptenodytes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008794457.1 (2126400..2156276, complement)

NW_008794457.1Genomic Context describing neighboring genes Neighboring gene MTSS I-BAR domain containing 2 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene interleukin 34 Neighboring gene component of oligomeric golgi complex 4 Neighboring gene fucose kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008794457.1 Unplaced Scaffold Reference ASM69914v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U2 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69914v1

Genomic

  1. NW_008794457.1 Reference ASM69914v1

    Range
    2126400..2156276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009290791.2 → XP_009289066.1  splicing factor 3B subunit 3

    See identical proteins and their annotated locations for XP_009289066.1

    UniProtKB/TrEMBL
    A0A087QNC6
    Conserved Domains (2) summary
    pfam03178
    Location:863 → 1182
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:76 → 592
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term
Nucleotide Protein
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