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ZBTB42 zinc finger and BTB domain containing 42 [ Serinus canaria (Common canary) ]

Gene ID: 103826386, updated on 12-Aug-2024

Summary

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Gene symbol
ZBTB42
Gene description
zinc finger and BTB domain containing 42
See related
EnsemblRapid:ENSSCAG00000023311
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 5 NC_066319.1 (53793688..53802485)

Chromosome 5 - NC_066319.1Genomic Context describing neighboring genes Neighboring gene SIVA1 apoptosis inducing factor Neighboring gene AKT serine/threonine kinase 1 Neighboring gene uncharacterized LOC115485499 Neighboring gene centrosomal protein 170B Neighboring gene phospholipase D family member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066319.1 Chromosome 5 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066319.1 Reference serCan2020 Primary Assembly

    Range
    53793688..53802485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030240660.2 → XP_030096520.1  zinc finger and BTB domain-containing protein 42

    UniProtKB/TrEMBL
    A0A8C9UBA2
    Related
    ENSSCAP00000027789.1, ENSSCAT00000034381.1
    Conserved Domains (3) summary
    sd00017
    Location:389 → 409
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18325
    Location:1 → 128
    BTB_POZ_ZBTB18_2-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18.2 and similar proteins
    pfam13465
    Location:402 → 424
    zf-H2C2_2; Zinc-finger double domain

  2. XM_050975508.1 → XP_050831465.1  zinc finger and BTB domain-containing protein 42

    UniProtKB/TrEMBL
    A0A8C9UBA2
    Related
    ENSSCAP00000034243.1, ENSSCAT00000029561.1
Nucleotide Protein
Heading Accession and Version

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