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PHF2 PHD finger protein 2 [ Serinus canaria (Common canary) ]

Gene ID: 103817105, updated on 12-Aug-2024

Summary

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Gene symbol
PHF2
Gene description
PHD finger protein 2
See related
EnsemblRapid:ENSSCAG00000010589
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
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Genomic context

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See PHF2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 12 NC_066326.1 (20343137..20397436, complement)

Chromosome 12 - NC_066326.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108962171 Neighboring gene uncharacterized LOC115484121 Neighboring gene family with sequence similarity 120 member A Neighboring gene WNK lysine deficient protein kinase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066326.1 Chromosome 12 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase PHF2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066326.1 Reference serCan2020 Primary Assembly

    Range
    20343137..20397436 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030227969.2 → XP_030083829.1  lysine-specific demethylase PHF2 isoform X1

    UniProtKB/TrEMBL
    A0A8C9NAU1
    Related
    ENSSCAP00000014411.2, ENSSCAT00000016157.2
    Conserved Domains (4) summary
    smart00558
    Location:201 → 264
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15554
    Location:7 → 53
    PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7
    pfam02373
    Location:236 → 336
    JmjC; JmjC domain, hydroxylase
    pfam17811
    Location:340 → 443
    JHD; Jumonji helical domain

  2. XM_030227970.2 → XP_030083830.1  lysine-specific demethylase PHF2 isoform X2

    UniProtKB/TrEMBL
    A0A8C9NAU1
    Conserved Domains (4) summary
    smart00558
    Location:201 → 264
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15554
    Location:7 → 53
    PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7
    pfam02373
    Location:236 → 336
    JmjC; JmjC domain, hydroxylase
    pfam17811
    Location:340 → 443
    JHD; Jumonji helical domain
Nucleotide Protein
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