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Cacna1d calcium voltage-gated channel subunit alpha1 D [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103749025, updated on 11-Mar-2024

Summary

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Gene symbol
Cacna1d
Gene description
calcium voltage-gated channel subunit alpha1 D
See related
Ensembl:ENSNGAG00000016670
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Cacna1d in Genome Data Viewer
Location:
chromosome: Un
Exon count:
50
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008354534.1 (1129731..1486732)

NW_008354534.1Genomic Context describing neighboring genes Neighboring gene decapping mRNA 1A Neighboring gene phosphatidylethanolamine-binding protein 1 pseudogene Neighboring gene thyroid transcription factor 1-associated protein 26 pseudogene Neighboring gene choline dehydrogenase Neighboring gene interleukin 17 receptor B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008354534 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage-dependent L-type calcium channel subunit alpha-1D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008354534.1 Reference S.galili_v1.0 Primary Assembly

    Range
    1129731..1486732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008851829.2 → XP_008850051.1  voltage-dependent L-type calcium channel subunit alpha-1D isoform X2

    UniProtKB/TrEMBL
    A0A8C6RCN8
    Conserved Domains (4) summary
    pfam00520
    Location:125 → 417
    Ion_trans; Ion transport protein
    pfam08763
    Location:1545 → 1616
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1639 → 2156
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1481 → 1534
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  2. XM_008851828.2 → XP_008850050.1  voltage-dependent L-type calcium channel subunit alpha-1D isoform X1

    UniProtKB/TrEMBL
    A0A8C6RCN8
    Related
    ENSNGAP00000015802.1, ENSNGAT00000021409.1
    Conserved Domains (4) summary
    pfam00520
    Location:125 → 417
    Ion_trans; Ion transport protein
    pfam08763
    Location:1565 → 1636
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1659 → 2176
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1501 → 1554
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
Nucleotide Protein
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